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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14857787_14858859_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14857787 - 14858859
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCCC
5'SS Class:
major
3'SS Sequence:
CCTCTCTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
CCTCCCCCATCC
Flanking Amino Acid:
TDKQTWASSQQLKASQQEEA
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
62.6
42.2
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
79.8
0.67
0.7
72
32.6
Minor 5ss
39.2
-1.2
3
52.3
44.4
Minor BPS
42.8
-0.5
2
52.79
44.4

Associated Gene:

Gene:
VSTM2L
Ensembl Gene ID:
ENSAPLG00000028899
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034366
14857247 - 14863117
5871