About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14871907_14872010_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14871907 - 14872010
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCTTTCTCATTC
Flanking Amino Acid:
QPMKLQEAAQSTSVSCRTGS
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.9
0.78
0.7
77.2
31.6
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
48.3
-0.1
1.8
57.34
42.4

Associated Gene:

Gene:
TTI1
Ensembl Gene ID:
ENSAPLG00000002738
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002764
14871815 - 14879600
7786