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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14892353_14895555_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14892353 - 14895555
Intron Length:
3203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
AACTTGCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TAATGACAAACT
Flanking Amino Acid:
VLTEKEKKLESLCCRIGHSL
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
72.7
0.51
1
62.3
43.5
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
41.3
-0.5
2.4
64.22
45.3

Associated Gene:

Gene:
RPRD1B
Ensembl Gene ID:
ENSAPLG00000002778
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043001
14879788 - 14895707
15920