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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14892353_14898620_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14892353 - 14898620
Intron Length:
6268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTAATTT
Flanking Amino Acid:
VLTEKEKKLEEYKQKLARVT
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.3
0.77
0.6
84.8
22.9
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
49.7
0.06
1.9
71.36
40.7

Associated Gene:

Gene:
RPRD1B
Ensembl Gene ID:
ENSAPLG00000002778
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002841
14879788 - 14899452
19665