Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14912445_14912800_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14912445 - 14912800

Intron Length:

356

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCACCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

CCTGTCTCACCG

Flanking Amino Acid:

VYIGRVVSAMVNCNDEDRGV

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

67.6

37.6

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

72.9

0.52

0.9

66.8

34.1

Minor 5ss

30.2

-2.3

2.8

Minor BPS

43.9

-0.6

1.9

46.07

Associated Gene:

Gene:

TGM2

Ensembl Gene ID:

ENSAPLG00000001999

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002075

14907709 - 14917199

9491

ENSAPLT00000047439

14907709 - 14917631

9923