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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14930535_14930821_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14930535 - 14930821
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTCTGTTTATCT
Flanking Amino Acid:
LQEVKMLSDQGVKEVTLLGQ
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.6
0.8
0.7
81.5
30.3
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
50.7
0.1
2.1
70.73
46.8

Associated Gene:

Gene:
CDK5RAP1
Ensembl Gene ID:
ENSAPLG00000008506
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025274
14929007 - 14933304
4298
ENSAPLT00000020747
14925023 - 14933133
8111
ENSAPLT00000008867
14924782 - 14933133
8352