About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14931405_14931516_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14931405 - 14931516
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GGTTTCTGATCA
Flanking Amino Acid:
STRVLEAMRRGYTREAYLEL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.4
0.66
0.8
74.8
34.7
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
53.7
0.11
1.7
65.73
40.2

Associated Gene:

Gene:
CDK5RAP1
Ensembl Gene ID:
ENSAPLG00000008506
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025274
14929007 - 14933304
4298
ENSAPLT00000020747
14925023 - 14933133
8111
ENSAPLT00000008867
14924782 - 14933133
8352