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Intron Name: Anas_platyrhynchos_platyrhynchos_21_14931820_14931936_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14931820 - 14931936

Intron Length:

117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGAGAA

U12 Branch Point Sequence:

TGCTTGTTGAGA

Flanking Amino Acid:

GFLFAYSMRQKTRAYHRLQD

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.7

80.2

27.1

Major BPS

54.8

0.12

1.2

52.7

43.2

Major PPT

82.5

0.73

0.9

76.5

37.5

Minor 5ss

27.5

-2.6

32.5

42.3

Minor BPS

45.4

-0.3

2.3

57.91

42.1

Associated Gene:

Gene:

CDK5RAP1

Ensembl Gene ID:

ENSAPLG00000008506

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025274

14929007 - 14933304

4298

ENSAPLT00000020747

14925023 - 14933133

8111

ENSAPLT00000008867

14924782 - 14933133

8352