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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14972863_14973066_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14972863 - 14973066
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
CTTCTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAT
U12 Branch Point Sequence:
GGACCCGCACCC
Flanking Amino Acid:
DLGSLFVLDVHSDLGAQFAV
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.7
39
Major BPS
57.6
0.19
1
64.6
32.2
Major PPT
83.3
0.75
0.7
77.4
24.5
Minor 5ss
37.9
-1.4
3
43.9
45.7
Minor BPS
39.1
-0.8
2.2
46.92
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003361
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003428
14970120 - 14977622
7503