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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14973606_14974251_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14973606 - 14974251
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTAAT
5'SS Class:
major
3'SS Sequence:
GCTTCCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
GCTTCCTCAACA
Flanking Amino Acid:
SFSLNISNNMILGLPPLVTT
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.8
35.2
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
71.5
0.48
0.9
66
34.6
Minor 5ss
30.7
-2.2
3
38.1
41.3
Minor BPS
71.8
0.68
1.5
76.68
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003361
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003428
14970120 - 14977622
7503