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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14974429_14974997_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14974429 - 14974997
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CGGGTCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGTACTCTGACA
Flanking Amino Acid:
SEAFIQLDLRTILHKKEGEE
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
70.7
0.47
1
65.7
41
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
55
0.15
1.7
68.92
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003361
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003428
14970120 - 14977622
7503