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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14975284_14975650_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14975284 - 14975650
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTCTCACAGCT
Flanking Amino Acid:
SSLQKVLPSLLCPAVDAVLN
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.6
0.67
0.8
70.1
36.5
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
45.3
-0.2
2
67.74
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003361
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003428
14970120 - 14977622
7503