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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14979698_14981072_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14979698 - 14981072
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCCCAGGAA
5'SS Class:
weak_major
3'SS Sequence:
CCTCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGTGCTGACCG
Flanking Amino Acid:
NGNRKAGWTQSSAVAPLCAL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1.2
47.8
37.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
76.3
0.59
0.7
69.3
24.5
Minor 5ss
13.6
-4.2
3.8
18.9
35.7
Minor BPS
44.6
-0.5
2.2
51.53
48.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003437
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045095
14979661 - 14986205
6545