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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14981221_14981820_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14981221 - 14981820
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGAGGCA
5'SS Class:
major
3'SS Sequence:
TCCTCTCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
GGGCTCTTAACA
Flanking Amino Acid:
RKYTARTSPSRDQISSVQVV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
67.8
33.7
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
70
0.45
0.9
66.7
33.2
Minor 5ss
17.1
-3.8
4.1
29.2
43.6
Minor BPS
65.5
0.48
1.3
66.27
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003437
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045095
14979661 - 14986205
6545