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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14981497_14981832_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14981497 - 14981832
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GGGACCAAATCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
TTCCTCTCAAGC
Flanking Amino Acid:
DLTLGSPKASSSVQVVDLSL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
48.6
-0
1.1
42
42.1
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
49.9
-0
1.9
63.43
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003437
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003503
14981099 - 14986205
5107