Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14982139_14982698_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14982139 - 14982698

Intron Length:

560

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCCCA

5'SS Class:

major

3'SS Sequence:

TATTTTCATCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGCTGCCTAACT

Flanking Amino Acid:

VEVQSAEEVGSKSSSSDLDK

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.53

1.3

62.5

43.9

Major BPS

100

1.24

0.5

100

Major PPT

0.72

0.9

74.6

Minor 5ss

33.6

-1.9

2.9

40.6

45.1

Minor BPS

55.8

0.26

2.1

77.44

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003437

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045095

14979661 - 14986205

6545

ENSAPLT00000003503

14981099 - 14986205

5107