Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14984765_14985583_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14984765 - 14985583

Intron Length:

819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAACGAGT

5'SS Class:

weak_major

3'SS Sequence:

CACCCCTTTAGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTCCAC

U12 Branch Point Sequence:

CTCTCTCCACCC

Flanking Amino Acid:

TRMMISAAVIDQAIKKPTLW

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.5

0.18

1.3

46.6

Major BPS

54.8

0.12

1.3

66.4

39.9

Major PPT

0.07

1.7

35.1

Minor 5ss

40.8

-1

3.2

53.7

44.5

Minor BPS

43.3

-0.5

54.53

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003437

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045095

14979661 - 14986205

6545

ENSAPLT00000003503

14981099 - 14986205

5107