Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14988869_14989175_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14988869 - 14989175

Intron Length:

307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTAAG

U12 Branch Point Sequence:

TGCCTGGTAAGG

Flanking Amino Acid:

LAETLLPLINGCLGVGIPLP

Intron Amino Acid Position:

386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

76.6

33.6

Major BPS

48.1

-0.1

1.7

55.4

48.1

Major PPT

78.4

0.64

0.8

73.1

31.8

Minor 5ss

31.7

-2.1

3.1

36.4

Minor BPS

35.4

-1.2

2.5

40.22

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017837

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030106

14987682 - 14997900

10219

ENSAPLT00000021261

14987682 - 14998085

10404