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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14989786_14991120_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14989786 - 14991120
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCTGT
5'SS Class:
weak_major
3'SS Sequence:
TCTGCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTGCTTCCACA
Flanking Amino Acid:
SSLVLALSLGSTSLSLESSD
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
60.6
46.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
77.8
0.63
0.8
72
32.6
Minor 5ss
49.7
-0
3
73.6
43
Minor BPS
47.8
-0.1
2.1
62.68
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017837
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030106
14987682 - 14997900
10219
ENSAPLT00000021261
14987682 - 14998085
10404