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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14991437_14991636_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14991437 - 14991636
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
GCCACCTCCATG
Flanking Amino Acid:
DAVLTLFPSGCSSCSMNSPL
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
70.8
0.47
0.7
63.9
24.5
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
42.2
-0.7
2
40.62
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017837
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030106
14987682 - 14997900
10219
ENSAPLT00000021261
14987682 - 14998085
10404