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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14992233_14992355_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14992233 - 14992355
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGGC
5'SS Class:
major
3'SS Sequence:
CCTCCTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCTTTCTCAACG
Flanking Amino Acid:
GMDLDGAVQQVQPQTFTCTP
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
60.3
39.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.9
0.45
1
61.1
39.2
Minor 5ss
23.9
-3
3.3
32.2
42.7
Minor BPS
61.7
0.23
1.7
63.97
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017837
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030106
14987682 - 14997900
10219
ENSAPLT00000021261
14987682 - 14998085
10404