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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14992371_14993358_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14992371 - 14993358
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GCCACCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TAGCATTTAACA
Flanking Amino Acid:
SGLYLGMDLDGAVQQVQPQT
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
64.8
0.33
0.9
57.3
33.2
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
60.8
0.33
1.5
67.17
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017837
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030106
14987682 - 14997900
10219
ENSAPLT00000021261
14987682 - 14998085
10404