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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14994459_14995753_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14994459 - 14995753
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CTCTCATTCATT
Flanking Amino Acid:
LGAVKIKLLSGLLSLSVNDL
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
87.3
0.84
0.7
80
32
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
52
0.14
2.1
72.41
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017837
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030106
14987682 - 14997900
10219
ENSAPLT00000021261
14987682 - 14998085
10404