Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15035644_15036037_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15035644 - 15036037

Intron Length:

394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TATCCCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTAAAG

Flanking Amino Acid:

RIVEILYATDEGFVIPDEGA

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

89.1

24.2

Major BPS

100

1.24

0.5

100

Major PPT

81.4

0.71

0.8

77.8

30.5

Minor 5ss

39.8

-1.1

2.9

41.5

Minor BPS

70.4

0.5

1.8

78.39

37.7

Associated Gene:

Gene:

MAPRE1

Ensembl Gene ID:

ENSAPLG00000027095

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042876

15034587 - 15041917

7331

ENSAPLT00000017897

15033975 - 15041180

7206