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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1504522_1507747_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1504522 - 1507747
Intron Length:
3226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
ATATGTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TCTACCATATGT
Flanking Amino Acid:
PGQPYGIPSYSIKTEDSLSH
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
71.3
0.53
1
61.3
37
Major PPT
60.6
0.24
1.1
60.1
40
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
46.9
-0.1
2.2
69.49
46.9

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028594
1454257 - 1552764
98508
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000046772
1454257 - 1552764
98508
ENSAPLT00000021341
1411509 - 1552764
141256
ENSAPLT00000044559
1411509 - 1518739
107231
ENSAPLT00000009703
1454257 - 1545787
91531
ENSAPLT00000030131
1411509 - 1518739
107231