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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15045788_15045951_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15045788 - 15045951
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
CCCCCTGTAATT
Flanking Amino Acid:
DKRDISRFLECNPVMIDAIK
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
75.4
0.57
0.9
68.9
37.1
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
47.1
-0.1
2
59.98
44.7

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023423
15042695 - 15060726
18032
ENSAPLT00000017201
15042695 - 15053650
10956
ENSAPLT00000003694
15042695 - 15056060
13366
ENSAPLT00000046242
15042695 - 15053650
10956
ENSAPLT00000032936
15042695 - 15060726
18032