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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15046188_15046325_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15046188 - 15046325
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
CTGTCTCCACCC
Flanking Amino Acid:
LVSPSRKALYGPPAPTPPPQ
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.1
45
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
70.9
0.47
0.9
62.7
38.8
Minor 5ss
34.5
-1.8
3.4
44.4
44.4
Minor BPS
43.3
-0.5
2
54.64
43.8

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023423
15042695 - 15060726
18032
ENSAPLT00000017201
15042695 - 15053650
10956
ENSAPLT00000003694
15042695 - 15056060
13366
ENSAPLT00000046242
15042695 - 15053650
10956
ENSAPLT00000032936
15042695 - 15060726
18032