About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15047299_15047605_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15047299 - 15047605
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACCC
5'SS Class:
major
3'SS Sequence:
GTGCTTTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAA
U12 Branch Point Sequence:
TGGCAGTGAACG
Flanking Amino Acid:
LLLCSNASCCRCFCVECLEV
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
59.5
39.8
Major BPS
51.9
0.05
1.2
44.7
38.6
Major PPT
64
0.32
1.1
61.1
44.6
Minor 5ss
26.4
-2.7
3.1
33.7
41.8
Minor BPS
41.7
-0.7
2.2
47.86
44.6

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023423
15042695 - 15060726
18032
ENSAPLT00000017201
15042695 - 15053650
10956
ENSAPLT00000003694
15042695 - 15056060
13366
ENSAPLT00000046242
15042695 - 15053650
10956
ENSAPLT00000032936
15042695 - 15060726
18032