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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15048076_15048428_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15048076 - 15048428
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCGCT
5'SS Class:
major
3'SS Sequence:
CTCTGCCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAG
U12 Branch Point Sequence:
GTGAGCAGAGCT
Flanking Amino Acid:
EVTNNSGSLEDSCLSCGRRN
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
71.6
38.4
Major BPS
39.8
-0.6
1.7
45.5
47.5
Major PPT
75.9
0.58
0.8
72.7
32.1
Minor 5ss
39
-1.2
3.4
57.2
47
Minor BPS
38.5
-0.7
2.1
55.76
45.5

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017201
15042695 - 15053650
10956
ENSAPLT00000003694
15042695 - 15056060
13366
ENSAPLT00000046242
15042695 - 15053650
10956
ENSAPLT00000032936
15042695 - 15060726
18032
ENSAPLT00000023423
15042695 - 15060726
18032