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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15048474_15048883_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15048474 - 15048883
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTATTTTATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTATA
Flanking Amino Acid:
EQRVEEDQTREQMVSEVTNN
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.3
0.52
1.1
75.5
37.6
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
60.3
0.32
1.8
75.84
35.2

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032936
15042695 - 15060726
18032
ENSAPLT00000023423
15042695 - 15060726
18032
ENSAPLT00000017201
15042695 - 15053650
10956
ENSAPLT00000003694
15042695 - 15056060
13366
ENSAPLT00000046242
15042695 - 15053650
10956