About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15050705_15051300_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15050705 - 15051300
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CGCTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAA
U12 Branch Point Sequence:
CAACGCTGAGCT
Flanking Amino Acid:
QWFGDGKFSEVSADKLVGLM
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
49.1
-0
1.3
58.4
40.3
Major PPT
65.2
0.34
0.9
56.9
38.7
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
42.9
-0.4
2
56.79
44.9

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046242
15042695 - 15053650
10956
ENSAPLT00000032936
15042695 - 15060726
18032
ENSAPLT00000023423
15042695 - 15060726
18032
ENSAPLT00000003694
15042695 - 15056060
13366