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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15051460_15052573_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15051460 - 15052573
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
CTTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATCT
Flanking Amino Acid:
REAGIALEYQDGKEFGIGEL
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
87.2
0.84
0.8
84.6
30.3
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
69.8
0.7
2
91.83
37.8

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023423
15042695 - 15060726
18032
ENSAPLT00000017201
15042695 - 15053650
10956
ENSAPLT00000003694
15042695 - 15056060
13366
ENSAPLT00000046242
15042695 - 15053650
10956
ENSAPLT00000032936
15042695 - 15060726
18032