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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15052763_15053214_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15052763 - 15053214
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
CTCTCCCGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GTGCTCACACCT
Flanking Amino Acid:
NLRDLPTPLRSSRRRSAMPV
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70
0.45
0.9
64.8
30.7
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
42.1
-0.5
2
59.19
43.6

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032936
15042695 - 15060726
18032
ENSAPLT00000023423
15042695 - 15060726
18032
ENSAPLT00000003694
15042695 - 15056060
13366