About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15053368_15054536_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15053368 - 15054536
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAC
U12 Branch Point Sequence:
TGCCACACACCT
Flanking Amino Acid:
WPLTLSEAQETRPRGSAGWE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
49.1
-0
0.9
56.3
29.4
Major PPT
83.2
0.75
0.8
77
31.6
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
39.6
-0.7
2
56.85
44.7

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032936
15042695 - 15060726
18032
ENSAPLT00000023423
15042695 - 15060726
18032
ENSAPLT00000003694
15042695 - 15056060
13366