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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15055389_15055982_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15055389 - 15055982
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
GATGCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTCCTCTCCACT
Flanking Amino Acid:
CPPHHTPCMCATMKKENLSR
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
64.4
41.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
68.8
0.42
0.9
61.3
39.8
Minor 5ss
35
-1.7
3.3
44.4
43.5
Minor BPS
49.7
0.06
2
73.07
43.9

Associated Gene:

Gene:
DNMT3B
Ensembl Gene ID:
ENSAPLG00000003607
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003694
15042695 - 15056060
13366