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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15076418_15076495_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15076418 - 15076495
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCACATAT
Flanking Amino Acid:
EQVRADFIALGLSEEKASYF
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.8
73
32
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
43.2
-0.4
2
67.29
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003939
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022122
15073618 - 15078785
5168
ENSAPLT00000004048
15073618 - 15078785
5168