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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15076534_15077076_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15076534 - 15077076
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
CTTGCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TCCCTCTGAATT
Flanking Amino Acid:
EEKASYFAEQWRLNSPTLTR
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
82.9
0.74
0.8
76.8
31.8
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
57.7
0.32
1.5
69.48
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003939
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022122
15073618 - 15078785
5168
ENSAPLT00000004048
15073618 - 15078785
5168