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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15077168_15077288_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15077168 - 15077288
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGAG
5'SS Class:
major
3'SS Sequence:
TTCTGACTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTGACTC
Flanking Amino Acid:
QLIDMEWKFGVTAGSSELEK
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.9
37.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
75.7
0.58
0.9
68.9
36.2
Minor 5ss
29.8
-2.3
3.3
38.1
46.8
Minor BPS
54.2
0.11
1.7
66.18
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003939
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022122
15073618 - 15078785
5168
ENSAPLT00000004048
15073618 - 15078785
5168