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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1507891_1508514_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1507891 - 1508514
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TTGTTCTCAATA
Flanking Amino Acid:
PHCPLHLYSTKHYPHIVTVS
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
84.1
26.4
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
73.8
0.54
0.9
70.8
34.8
Minor 5ss
34.9
-1.7
3.4
49.4
41.3
Minor BPS
67.3
0.54
1.5
74.96
37.1

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009703
1454257 - 1545787
91531
ENSAPLT00000030131
1411509 - 1518739
107231
ENSAPLT00000028594
1454257 - 1552764
98508
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000046772
1454257 - 1552764
98508
ENSAPLT00000021341
1411509 - 1552764
141256
ENSAPLT00000044559
1411509 - 1518739
107231