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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1508564_1511310_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1508564 - 1511310
Intron Length:
2747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GACCCTTTAATT
Flanking Amino Acid:
IFHSEYEGESGNSKAAPHCP
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
65.3
0.56
1.3
71.24
39.9

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044559
1411509 - 1518739
107231
ENSAPLT00000030131
1411509 - 1518739
107231
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000021341
1411509 - 1552764
141256
ENSAPLT00000046772
1454257 - 1552764
98508