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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1511356_1513229_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1511356 - 1513229
Intron Length:
1874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTCAAAACT
Flanking Amino Acid:
IYAVAPDDIEGKSKQIFHSE
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
64.1
43.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
42.8
-0.8
3.2
58.8
46.1
Minor BPS
59.7
0.38
1.9
82.93
38.1

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044559
1411509 - 1518739
107231
ENSAPLT00000030131
1411509 - 1518739
107231
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000021341
1411509 - 1552764
141256
ENSAPLT00000046772
1454257 - 1552764
98508