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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1513349_1518645_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1513349 - 1518645
Intron Length:
5297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATGAATAAAT
Flanking Amino Acid:
HLFPQAVFYCRYKEMLDLVI
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
68.4
42.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.7
0.85
0.7
85.6
29.1
Minor 5ss
43.4
-0.7
2.8
60.7
43.6
Minor BPS
44.1
-0.3
2.2
66.19
43.2

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030131
1411509 - 1518739
107231
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000044559
1411509 - 1518739
107231