Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1513349_1552261_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1513349 - 1552261

Intron Length:

38913

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAGGTGCG

5'SS Class:

major

3'SS Sequence:

TGTTTTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TAATGAATAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.1

Major BPS

0.82

0.8

24.9

Major PPT

87.7

0.85

0.7

85.6

29.1

Minor 5ss

32.1

-2

3.4

41.4

Minor BPS

44.1

-0.3

2.2

66.19

43.2

Associated Gene:

Gene:

EYA2

Ensembl Gene ID:

ENSAPLG00000009249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046772

1454257 - 1552764

98508

ENSAPLT00000028594

1454257 - 1552764

98508

ENSAPLT00000021341

1411509 - 1552764

141256