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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15158882_15159102_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15158882 - 15159102
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CGTCTCCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
CCCACGGTAACC
Flanking Amino Acid:
VKYAVKTTAESPPYSSGSYD
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
75.2
0.57
0.8
69
31.5
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
41.3
-0.6
2.5
50.09
46.8

Associated Gene:

Gene:
NOL4L
Ensembl Gene ID:
ENSAPLG00000004109
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004218
15121740 - 15163273
41534