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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15175845_15176312_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15175845 - 15176312
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAGCTTCTAACT
Flanking Amino Acid:
EKFFEDYYGQRLGLTQEESQ
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.4
0.6
0.9
69.6
36.9
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
53.9
0.2
1.7
70.88
39.9

Associated Gene:

Gene:
ASXL1
Ensembl Gene ID:
ENSAPLG00000023194
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041809
15169599 - 15180084
10486