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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15176419_15176925_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15176419 - 15176925
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TTGTTTGGAACT
Flanking Amino Acid:
AQSWRERLADGEFTHEMQVR
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
73.4
0.53
0.9
69.5
36.8
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
50.5
0.1
2.1
75.75
41.5

Associated Gene:

Gene:
ASXL1
Ensembl Gene ID:
ENSAPLG00000023194
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041809
15169599 - 15180084
10486