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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15177293_15177704_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15177293 - 15177704
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTAAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTGTCCTTAAAC
Flanking Amino Acid:
LLRGIRKPTAGQMKRNRGED
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
70.9
0.47
0.9
62.5
37.2
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
73.7
0.72
1.4
75.54
40.9

Associated Gene:

Gene:
ASXL1
Ensembl Gene ID:
ENSAPLG00000023194
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041809
15169599 - 15180084
10486