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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15178247_15178602_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15178247 - 15178602
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGGACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGGAC
U12 Branch Point Sequence:
TCTTTCTGGACC
Flanking Amino Acid:
ARESSRTASQTTKQKKKTGV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
49.6
-0
1.4
51
44.3
Major PPT
68.9
0.43
1
61.6
38.9
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
65.7
0.48
1.5
73.88
37.2

Associated Gene:

Gene:
ASXL1
Ensembl Gene ID:
ENSAPLG00000023194
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041809
15169599 - 15180084
10486