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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15178897_15180006_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15178897 - 15180006
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
GTCACCTGAGCT
Flanking Amino Acid:
PGRISLFTLKKDALQWSRNL
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
77.6
0.62
0.8
74.9
30.4
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
52.7
0.16
1.8
70.88
45.3

Associated Gene:

Gene:
ASXL1
Ensembl Gene ID:
ENSAPLG00000023194
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041809
15169599 - 15180084
10486