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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15190964_15191228_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15190964 - 15191228
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
ESTSNKKPKARPKTGRKSGG
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
85.3
29.3
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
KIF3B
Ensembl Gene ID:
ENSAPLG00000004629
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004790
15188451 - 15198579
10129